MCAT Biochemistry Ch. 3 Nonenzymatic Protein Function & Protein Analysis

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Structural proteins
Make up the cytoskeleton, anchoring proteins, & extracellular matrix. Include collagen, elastin, keratin, & tubulin.
Motor proteins
Have 1 or more heads that can generate force through a conformational change. They have catalytic activity, acting as ATPases to generate movement like muscle contraction, vesicle movement, & cell motility. Include myosin, kinesin, & dynein.
Binding proteins
Bind a specific substrate, to either sequester it in the body or hold its concentration at a steady state.
Cell Adhesion Molecules (CAM)
Allow cells to bind to other cells or surfaces. Include cahedrins (hold similar cells together), integrins (help cells stick to proteins), & selectins (help sells to stick to carbohydrates)
Antibodies (Immunoglobulins, Ig)
Used by immune system to target a specific antigen. Contain constant & variable (region responsible for antigen binding) regions. Have 2 heavy & 2 light chains held together by disulfide linkages & noncovalent interactions
Ion channels
Regulate ion flow into & out of cell. 3 types: ungated, voltage-gated, & ligand-gated
Ungated channels are ___
Always open. *The channels responsible for keeping a cell at its resting membrane potential are ungated channels
Voltage-Gated Channels are ___
Open w/in a range of membrane potentials
Ligand-Gated Channels ___
Open in the presence of a specific binding substance, usually a hormone or neurotransmitter
Enzyme-Linked Receptors
Participate in cell signaling through extracellular ligand binding & initiation of second messenger cascades
G protein-coupled receptors
Have a membrane-bound protein associated w/ a trimeric G protein. Initiate second messenger systems (pg. 99 for process)
Electrophoresis
Uses gel matrix to observe the migration of proteins in response to an electric field. Includes Native PAGE, SDS-PAGE, & Isoelectric Focusing
Native PAGE (electrophoresis)
Maintains proteins shape, but results are difficult to compare because the mass to charge ratio differs for each protein
SDS-PAGE (electrophoresis)
Denatures the proteins & masks their native charge so that comparison of size is more accurate, but functional protein is destroyed in process
Isoelectric Focusing (electrophoresis)
Separates proteins by their pI. The proteins migrate toward an electrode until they reach a region of gel where pH = pI of the protein. The anode is positively charged and acidic pH & the cathode is negatively charged & basic pH